Comparing Transcriptomic Changes in POCD and AD Animal Models

Published on June 28, 2022

Imagine you’re baking two different types of pies: one is an apple pie and the other is a blueberry pie. Although both pies are delicious, they have distinct flavors and ingredients. In a similar way, postoperative cognitive dysfunction (POCD) and Alzheimer’s disease (AD) may share some similarities in their clinical manifestations, but when it comes to the changes happening at the genetic level, they show different patterns. This study compared the transcriptomic changes in animal models of POCD and AD to unravel their relationships. The findings revealed that the fold-changes in protein-coding transcripts between AD and POCD were only weakly correlated, suggesting that they are separate disease entities with unique molecular profiles. Interestingly, while both POCD and AD showed downregulation of mitochondrial complex and tubulin mRNAs, they went through different pathological changes in other pathways. This research sheds light on potential biomarkers and therapeutic targets for POCD, helping researchers identify ways to prevent or mitigate this common complication. For a deeper dive into the study, grab your lab coats and explore the full article!

BackgroundPostoperative cognitive dysfunction (POCD) is a common complication characterized by a significant cognitive decline. Increasing evidence suggests an association between the pathogenesis of POCD and Alzheimer’s disease (AD). However, a comprehensive understanding of their relationships is still lacking.MethodsFirst, related databases were obtained from GEO, ArrayExpress, CNGB, and DDBJ repositories. De novo analysis was performed on the raw data using a uniform bioinformatics workflow. Then, macro- and micro-level comparisons were conducted between the transcriptomic changes associated with AD and POCD. Lastly, POCD was induced in male C57BL/6j mice and the hippocampal expression levels of mRNAs of interest were verified by PCR and compared to those in AD congenic models.ResultsThere was a very weak correlation in the fold-changes in protein-coding transcripts between AD and POCD. Overall pathway-level comparison suggested that AD and POCD are two disease entities. Consistently, in the classical AD pathway, the mitochondrial complex and tubulin mRNAs were downregulated in both the POCD hippocampus and cortex. POCD and AD hippocampi might share the same pathways, such as tryptophan metabolism, but undergo different pathological changes in phagosome and transferrin endocytosis pathways. The core cluster in the hippocampal network was mainly enriched in mitosis-related pathways. The hippocampal expression levels of genes of interest detected by PCR showed good consistency with those generated by high throughput platforms.ConclusionPOCD and AD are associated with different transcriptomic changes despite their similar clinical manifestations. This study provides a valuable resource for identifying biomarkers and therapeutic targets for POCD.

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